Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015903416.1_cds_XP_016453456.1_47580
CDS Infomation

[gene=LOC107777823] [db_xref=GeneID:107777823] [protein=putative E3 ubiquitin-protein ligase RING1a isoform X2] [protein_id=XP_016453456.1] [location=join(14739..14997,15141..15180,18718..18776,21970..22051,22154..22274,22455..22496,23250..23783,23931..24038,24396..24602,24708..24746)] [gbkey=CDS]
Sequence

ATGCCAGCCCAGAAACGCTATTTGTCGAATTATCAAGATGACAATAACAACAACGAAGAC
GATGATGAGAACTCCCCCCAGCATCAGCACAGCCGGCGGAAACAATCCCGACGTGTTGCC
GGCGAACAAACACGAGCTAATATGGAAGAGCAACAAGTAGATGAGCAGGATGAAGAGGAA
GATGACCAAGCCCAAGCCCAAGATAATGATGATGAGGATGATGATGATCAAGAGGAAATT
AATCAATCGTCTGAAGATGATTCTGAGGGAAGTGGCACTGACCCTGAAGCCTTTGATGAA
TTGATCGCTGTGTCACGATCTGAGATTCGCACCAATGTACAATGTCCTATATGCTTAGGT
ATTATCAAGAGAACTCGGGTTGTGATGGGATGCCAACACCGTTTTTGCAGAGAATGCATA
GATAAATCAATGAGACTGGGGAATAATGAATGCCCTGCATGCCGCATACATTGTGCTAGC
CGACGGTCATTGAGAGATGATCCTGGATTTGATACCTTAATTGAGGCAATATATCCAGAT
GTTGAGAAGTACGAAGAGGAGGAGCTTGTCTTTCTTGAAGAGGAACGTGCACTCAATGAG
CAGATTCAAGCATCCATTGCCCAAATTTCTCAACGTCAATCTGAAGCACTAATTAAGAGG
CGCAAAGTTGGTAAAGACATAGCTGCTTCCTCTGCACAAAGAACACCTCGCAACTATCAC
AATGCTTATTCGAGAAGAAGAAGAAACAGTCAGGGGGCTGAACCTGAGCGATCTGATCCA
AATGAGAGTGAAAATGATGATCATGACAGGAACAAAGATTCACCCGCCAAGGATGAGCGT
GGAACACAAACCAAGTTCAGGAAGCGCCGGAGGCGCAAAGGAGCTCCGGCCACCCCGACT
TCTCCTTCAGCTGCAAGTCCAGACGGTGGACACATTGAAACCGCAGCAGAACTACCCAGA
GAAACAGTAGGCAGTTCTCCTGGACCTGCATTGAAGCCTGAAACACTTACTTGGGGAAGA
GGTGGTGCTCGAAGTCACAGTCGACACGGCAGTGCCAGCAGTAGCAGAAATGCTCGTAAC
ACTCGAATATCTAAGTTGATTGATTATCTTGAAAGTGTCCGAACAAATGATGGTGAGTTA
AATATCCATCTTGAGCTTATTCCATTGGACAAACAAACAACACCAAGTCTGAAAAAGCCC
CATCTCTGCTGCAGGCCAAGTACATCAGTTGAACACCTCTACGAATTTGTTGCTCAGGAG
ACAAAATCACAAGCAAAAGATGTTGAATTACTGGCAATAAAGGACAATACCACTGTTAAC
CATTCAACCTTAATGGATGCATCAAATATGCTAGCCCGATTTGTCAGGGGGTCCGATGTT
ACTCTGCAAAACTTGGAAAGGCGAGAAACTTTGGAAGGAATCAATTCAAGTTGCCCATTA
AATAAGAATCTGATCCTTGCTTACGTGCAAAAGAATTCAGCCGATATGTGA

Peptide Sequence

PEP ID

XP_016453456.1
PEP Infomation

PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Nicotiana tabacum]
Sequence

MPAQKRYLSNYQDDNNNNEDDDENSPQHQHSRRKQSRRVAGEQTRANMEEQQVDEQDEEE
DDQAQAQDNDDEDDDDQEEINQSSEDDSEGSGTDPEAFDELIAVSRSEIRTNVQCPICLG
IIKRTRVVMGCQHRFCRECIDKSMRLGNNECPACRIHCASRRSLRDDPGFDTLIEAIYPD
VEKYEEEELVFLEEERALNEQIQASIAQISQRQSEALIKRRKVGKDIAASSAQRTPRNYH
NAYSRRRRNSQGAEPERSDPNESENDDHDRNKDSPAKDERGTQTKFRKRRRRKGAPATPT
SPSAASPDGGHIETAAELPRETVGSSPGPALKPETLTWGRGGARSHSRHGSASSSRNARN
TRISKLIDYLESVRTNDGELNIHLELIPLDKQTTPSLKKPHLCCRPSTSVEHLYEFVAQE
TKSQAKDVELLAIKDNTTVNHSTLMDASNMLARFVRGSDVTLQNLERRETLEGINSSCPL
NKNLILAYVQKNSADM

Transcript Sequence

Gene sequence data has not been registered.